Business, Startups & Finance

Top 20 Alternatives to MHR (formerly Paychex Flex HR) in Payroll Software for Small Business

MHR (formerly Paychex Flex HR) offers cloud‑based payroll, HR, and benefits administration for small to midsize businesses. Below is a curated list of 20 payroll‑focused solutions that small businesses can consider as alternatives.

ID: 13446
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Gusto

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All‑in‑one payroll, benefits, and HR platform with automatic tax filing and employee self‑service.

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QuickBooks Online Payroll

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Integrated payroll for QuickBooks users; handles tax calculations, direct deposit, and compliance.

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ADP RUN

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Tailored payroll solution for small businesses with automated tax filing and HR tools.

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OnPay

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Simple, flat‑rate payroll with built‑in HR, benefits administration, and multi‑state tax support.

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Square Payroll

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Payroll service that integrates with Square POS; offers contractor payments and benefits.

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Patriot Payroll

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Low‑cost payroll for small businesses, featuring tax filing, direct deposit, and employee portal.

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SurePayroll

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Cloud‑based payroll with automatic tax filing, employee self‑service, and 24/7 support.

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Wave Payroll

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Payroll add‑on for Wave Accounting; handles taxes, direct deposit, and integrates with free accounting.

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Zoho Payroll

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Part of Zoho suite; offers payroll processing, compliance, and integration with Zoho Books.

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Xero Payroll

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Payroll module for Xero accounting users; supports automatic tax calculations and employee portals.

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Rippling

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Unified HR and payroll platform that automates onboarding, benefits, and payroll in one system.

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Paycor

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Payroll and HR solution focused on compliance, reporting, and employee engagement.

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Paycom

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Comprehensive payroll and HR suite with self‑service tools, tax compliance, and analytics.

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Wagepoint

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Payroll service for small businesses with easy setup, direct deposit, and multi‑state tax filing.

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Intuit Online Payroll

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Intuit’s payroll solution that integrates with QuickBooks and offers tax filing and employee self‑service.

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BambooHR (Payroll Add‑on)

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HR platform with optional payroll integration for streamlined employee data and payroll processing.

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Paylocity

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Modern payroll and HR platform with mobile access, compliance tools, and employee self‑service.

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Zenefits Payroll

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Payroll module that works with Zenefits HR suite; offers automated tax filing and benefits integration.

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PayRoll4Free

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Free payroll software for small businesses (up to 25 employees) with optional paid add‑ons for tax filing.

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Sage Payroll

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Scalable payroll solution from Sage, featuring tax compliance, reporting, and integration with Sage accounting.